C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143107 Rpl27a-001 ENSMUSG00000046364 10090 + 7:109519147-109522367 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000143107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000143107 131.194±62.04 58.687±20.80 262.881±6.23 91.975±30.66 128.903±84.58 240.472±44.74 38.419±9.76 94.827±29.63 173.374±116.34 129.106±17.70 39.072±10.80 314.179±125.77 144.910±87.44 67.076±24.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_00049H CIL_00049H_0002 CGP 7:109449006-109522367
CIL_00049E CIL_00049E_0002 CGP 7:109519147-109617147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 638
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 440
ENST00000415679 RP11-226L15.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000424277 RPL27AP8-001 processed_pseudogene Homo_sapiens 0 390
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 0 287
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 484
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 579
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 508
ENST00000525981 RPL27A-010 protein_coding Homo_sapiens 0 211
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 425
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 4e-25 119
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 610
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 0 195
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 425
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 411
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 0 287
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000578806 RP11-692N5.2-001 processed_pseudogene Homo_sapiens 0 278

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