C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6D, cGMP-specific, rod, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143674 Pde6d-002 ENSMUSG00000026239 10090 - 1:86543022-86582629 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastLungOvaryENSMUST00000143674
Transcript ID Adipose Adrenal Breast Lung Ovary
ENSMUST00000143674 0.953±0.00 1.008±0.00 1.282±0.57 0.883±0.00 1.029±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FM CIL_0007FM_0002 CGP 1:86526726-86582629
CIL_0007FL CIL_0007FL_0002 CGP 1:86542994-86609375

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007602 TAS phototransduction
GO:0008152 TAS metabolic process
GO:0047555 TAS 3',5'-cyclic-GMP phosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287600 PDE6D-001 protein_coding Homo_sapiens 0 638
ENST00000409772 PDE6D-005 protein_coding Homo_sapiens 0 394
ENST00000428104 PDE6D-004 protein_coding Homo_sapiens 0 350
ENST00000477748 PDE6D-002 processed_transcript Homo_sapiens 0 231
ENST00000486044 PDE6D-006 retained_intron Homo_sapiens 0 348

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