C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatic nuclear factor 4, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143911 Hnf4a-002 ENSMUSG00000017950 10090 + 2:163506808-163552635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLungOvaryENSMUST00000143911
Transcript ID Adipose Lung Ovary
ENSMUST00000143911 0.104±0.00 0.289±0.00 0.778±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R9 CIL_0007R9_0002 VISTA 2:163385776-163987192
CIL_0006S2 CIL_0006S2_0003 CGP 2:163492318-163572910
CIL_0002B3 CIL_0002B3_0002 CGP 2:163506808-163619013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006629 IMP lipid metabolic process
GO:0007548 IMP sex differentiation
GO:0008270 IEA zinc ion binding
GO:0010470 IMP regulation of gastrulation
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060395 IDA SMAD protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316673 HNF4A-001 protein_coding Homo_sapiens 0 473
ENST00000457232 HNF4A-005 protein_coding Homo_sapiens 0 385
ENST00000609262 HNF4A-008 protein_coding Homo_sapiens 0.00000000009 71
ENST00000609795 HNF4A-007 protein_coding Homo_sapiens 0 385
ENST00000619550 HNF4A-201 protein_coding Homo_sapiens 0.0000000002 73

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