C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 3000002C10 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144161 3000002C10Rik-002 ENSMUSG00000070282 10090 - 9:109827943-109832702 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144161 0.153±0.00 0.313±0.11 0.388±0.12 0.403±0.00 0.192±0.01 0.114±0.00 0.082±0.05 0.224±0.10 0.278±0.16 0.297±0.17 0.045±0.03 0.623±0.34 0.107±0.06 0.166±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0002 VISTA 9:109592964-110196468

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1122
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 924
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1110
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1122
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1122
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 870
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 935
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 806
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 255
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 573
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 793
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 737
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 966
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 859
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 636
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 843
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 737
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 610
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 756
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 996
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 765
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 601
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 924
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 924
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 737
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 798
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 776
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 835
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 617
ENST00000511530 GAPDHP71-001 processed_pseudogene Homo_sapiens 0 832
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 278
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 846
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 861
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 767
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1031

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