C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: interferon regulatory factor 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145680 Irf9-004 ENSMUSG00000002325 10090 + 14:55605820-55610027 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryENSMUST00000145680
Transcript ID Breast Liver Ovary
ENSMUST00000145680 4.586±0.00 3.750±0.00 2.460±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031B CIL_00031B_0002 CGP 14:55587441-55603693
CIL_00023F CIL_00023F_0002 CGP 14:55591708-55610030
CIL_0001CI CIL_0001CI_0002 CGP 14:55603571-55625395

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396864 IRF9-001 protein_coding Homo_sapiens 0 342
ENST00000557894 IRF9-004 protein_coding Homo_sapiens 0 342
ENST00000558468 IRF9-001 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000559229 IRF9-009 retained_intron Homo_sapiens 0 305
ENST00000560542 IRF9-011 retained_intron Homo_sapiens 0 346
ENST00000561342 IRF9-014 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000561415 IRF9-003 retained_intron Homo_sapiens 0 346

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