C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145713 Hmgn1-003 ENSMUSG00000040681 10090 - 16:96122234-96125339 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0002 VISTA 16:95547910-96149564
CIL_0004KG CIL_0004KG_0002 CGP 16:95992092-96127729
CIL_0003GM CIL_0003GM_0002 CGP 16:96120618-96157852

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288344 HMGN1-004 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000303758 HMGN1P35-001 processed_pseudogene Homo_sapiens 0 239
ENST00000380747 HMGN1-013 protein_coding Homo_sapiens 0 281
ENST00000380748 HMGN1-018 protein_coding Homo_sapiens 0 281
ENST00000380749 HMGN1-001 protein_coding Homo_sapiens 0 281
ENST00000419378 HMGN1-015 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000431390 HMGN1-002 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000436324 HMGN1-009 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000443046 HMGN1-017 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000482192 HMGN1-008 processed_transcript Homo_sapiens 0 281
ENST00000485550 HMGN1-021 processed_transcript Homo_sapiens 0 285
ENST00000486741 HMGN1-006 retained_intron Homo_sapiens 0 283
ENST00000489072 HMGN1-012 processed_transcript Homo_sapiens 0 285
ENST00000490032 HMGN1-010 processed_transcript Homo_sapiens 0 259
ENST00000492280 HMGN1-003 retained_intron Homo_sapiens 0 285
ENST00000495036 CPED1-002 processed_transcript Homo_sapiens 0 213
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 267

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