C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145976 Ybx1-007 ENSMUSG00000028639 10090 - 4:119278167-119279450 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000145976
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000145976 107.571±0.00 377.114±0.00 228.881±93.99 330.518±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197
CIL_0002SI CIL_0002SI_0002 CGP 4:119277981-119320546

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321358 YBX1-001 protein_coding Homo_sapiens 0 758
ENST00000436427 YBX1-002 protein_coding Homo_sapiens 0 758
ENST00000442962 YBX1P6-001 processed_pseudogene Homo_sapiens 0 241
ENST00000444752 YBX1P10-001 processed_pseudogene Homo_sapiens 0 357
ENST00000445822 YBX1P1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000489612 YBX1P2-001 processed_pseudogene Homo_sapiens 0 326
ENST00000509441 YBX1P5-001 processed_pseudogene Homo_sapiens 1e-20 104
ENST00000560358 RP11-244F12.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000616651 YBX1-201 protein_coding Homo_sapiens 0 745

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