C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN domain containing 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146330 Rundc3a-002 ENSMUSG00000006575 10090 + 11:102397864-102402555 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000146330
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000146330 0.390±0.00 3.290±0.96 0.174±0.02 28.872±4.57 0.347±0.01 1.035±0.33 0.063±0.00 1.222±0.65 1.522±0.66 0.171±0.03 0.173±0.02 0.614±0.22 0.302±0.17 12.460±4.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005JA CIL_0005JA_0002 CGP 11:102348824-102402555
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123712 rundc3ab-002 protein_coding Danio_rerio 0 233
ENSDART00000137081 rundc3ab-001 protein_coding Danio_rerio 0 233
ENST00000225441 RUNDC3A-002 protein_coding Homo_sapiens 0 758
ENST00000426726 RUNDC3A-001 protein_coding Homo_sapiens 0 841
ENST00000587483 RUNDC3A-004 retained_intron Homo_sapiens 0 808
ENST00000588564 RUNDC3A-007 retained_intron Homo_sapiens 0 449
ENST00000590834 RUNDC3A-003 retained_intron Homo_sapiens 0 758
ENST00000590941 RUNDC3A-005 protein_coding Homo_sapiens 0 736
ENST00000593079 RUNDC3A-006 retained_intron Homo_sapiens 0 405
ENST00000612735 RUNDC3A-201 protein_coding Homo_sapiens 0 758

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