C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15843
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146593 Gm15843-001 ENSMUSG00000085812 10090 + 1:72459499-72460027 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000146593
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000146593 0.211±0.00 0.485±0.40 0.328±0.13 0.182±0.06 0.094±0.00 0.102±0.00 0.245±0.30 0.134±0.00 0.089±0.00 0.316±0.23 0.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AO CIL_0000AO_0003 CGP 1:72307421-72536930
CIL_0000AN CIL_0000AN_0003 CGP 1:72427112-72633134

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 579
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 473
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 512
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 486
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 580
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 351
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 473
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 601
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 566
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 0 230
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 486
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 534
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 534
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 372
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 510
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 580
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 534
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 296
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 540
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 601
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 601
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 579
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 586
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 601
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 375
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 532
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 647
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 368
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 296
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 416
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 555
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 601
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 532
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 265
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 387
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 532
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 601
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 601

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