C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146686 Smg9-006 ENSMUSG00000002210 10090 + 7:24420195-24422639 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartLungOvaryPlacentaENSMUST00000146686
Transcript ID Adipose Brain Heart Lung Ovary Placenta
ENSMUST00000146686 4.872±0.24 6.455±0.95 1.461±0.14 4.063±0.00 7.087±0.08 0.769±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270066 SMG9-001 protein_coding Homo_sapiens 0 619
ENST00000594081 SMG9-012 retained_intron Homo_sapiens 0 276
ENST00000598860 SMG9-011 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000600097 SMG9-013 retained_intron Homo_sapiens 0 327
ENST00000601170 SMG9-002 protein_coding Homo_sapiens 0 477

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