C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: syntaxin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146864 Stx18-002 ENSMUSG00000029125 10090 + 5:38076557-38128073 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaTestisENSMUST00000146864
Transcript ID Muscle Ovary Placenta Testis
ENSMUST00000146864 2.840±0.27 16.385±6.70 34.219±13.97 27.227±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000967 CIL_000967_0002 VISTA 5:37518652-38119645
CIL_0008Y0 CIL_0008Y0_0002 VISTA 5:37525669-38129220
CIL_0008DJ CIL_0008DJ_0002 VISTA 5:37551391-38152218
CIL_000969 CIL_000969_0002 VISTA 5:37601106-38202493
CIL_00096C CIL_00096C_0002 VISTA 5:37617742-38218594
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306200 STX18-001 protein_coding Homo_sapiens 0 678
ENST00000503861 STX18-006 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000505286 STX18-002 protein_coding Homo_sapiens 0 678
ENST00000507908 STX18-004 protein_coding Homo_sapiens 0 630
ENST00000512195 STX18-007 protein_coding Homo_sapiens 0 558
ENST00000512780 STX18-005 retained_intron Homo_sapiens 0 355
ENST00000583091 RP11-1148O4.1-001 transcribed_processed_pseudogene Homo_sapiens 0 641

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