| Transcript ID | Colon | Ovary | Placenta | Testis |
|---|---|---|---|---|
| ENSMUST00000147486 | 0.088±0.00 | 0.152±0.00 | 0.071±0.02 | 0.155±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | orthodenticle homolog 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000147486  |
Otx1-003 |
ENSMUSG00000005917 |
10090 | - |
11:21996858-22002897  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007MW | CIL_0007MW_0003 | UCNEbase | 11:21694041-22206768 |
| CIL_00095K | CIL_00095K_0002 | VISTA | 11:21702480-22303824 |
| CIL_00090Q | CIL_00090Q_0002 | VISTA | 11:21710037-22311279 |
| CIL_00084N | CIL_00084N_0002 | VISTA | 11:21768163-22368901 |
| CIL_000976 | CIL_000976_0002 | VISTA | 11:21778416-22379452 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IC | nucleus |
| GO:0006357 | IDA | regulation of transcription from RNA polymerase II promoter |
| GO:0009952 | IGI | anterior/posterior pattern specification |
| GO:0022037 | IGI | metencephalon development |
| GO:0030900 | IGI | forebrain development |
| GO:0030901 | IGI | midbrain development |
| GO:0042472 | IGI | inner ear morphogenesis |
| GO:0048852 | IGI | diencephalon morphogenesis |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000282549
|
OTX1-001 | protein_coding | Homo_sapiens | 0 | 739 |
|
ENST00000366671
|
OTX1-002 | protein_coding | Homo_sapiens | 0 | 739 |
|
ENST00000405984
|
OTX1-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 311 |
|
ENST00000484066
|
OTX1-003 | retained_intron | Homo_sapiens | 0 | 311 |
