C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB guanine nucleotide exchange factor (GEF) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147493 Rabgef1-007 ENSMUSG00000025340 10090 + 5:130211381-130212975 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000147493
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000147493 3.592±0.91 9.888±2.37 3.418±0.00 5.708±1.06 7.768±1.35 2.966±0.00 3.320±0.00 2.267±0.31 5.478±1.07 7.371±2.56 1.340±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UP CIL_0005UP_0002 CGP 5:130144861-130214342
CIL_000256 CIL_000256_0002 CGP 5:130171798-130243765

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284957 RABGEF1-001 protein_coding Homo_sapiens 0 501
ENST00000380828 RABGEF1-201 protein_coding Homo_sapiens 0 501
ENST00000437078 RABGEF1-202 protein_coding Homo_sapiens 0 501
ENST00000439720 RABGEF1-003 protein_coding Homo_sapiens 0 501
ENST00000450873 RABGEF1-002 protein_coding Homo_sapiens 0 501
ENST00000461017 RABGEF1-006 processed_transcript Homo_sapiens 0 326
ENST00000484547 RABGEF1-004 processed_transcript Homo_sapiens 0 501
ENST00000503687 KCTD7-004 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000510829 RABGEF1-203 protein_coding Homo_sapiens 0 501
ENST00000607882 RABGEF1-007 nonsense_mediated_decay Homo_sapiens 0 501

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