C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: resistance to inhibitors of cholinesterase 3 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147580 Ric3-005 ENSMUSG00000048330 10090 - 7:109034312-109057824 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000147580
Transcript ID Adipose Adrenal Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000147580 0.601±0.00 8.256±0.45 8.576±0.00 0.661±0.16 0.055±0.00 0.100±0.07 0.211±0.00 0.343±0.01 0.586±0.14 0.143±0.00 1.539±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0002 VISTA 7:108496607-109099113
CIL_0009BA CIL_0009BA_0002 VISTA 7:108813133-109417303
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_00046S CIL_00046S_0002 CGP 7:108934417-109034460
CIL_0007IX CIL_0007IX_0003 CGP 7:109010825-109083331
CIL_00043B CIL_00043B_0002 CGP 7:109034312-109170308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0006457 IDA protein folding
GO:0016021 IDA integral component of membrane
GO:0043623 IDA cellular protein complex assembly
GO:0044183 IDA protein binding involved in protein folding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309737 RIC3-008 protein_coding Homo_sapiens 0 939
ENST00000335425 RIC3-001 protein_coding Homo_sapiens 0 553
ENST00000343202 RIC3-002 protein_coding Homo_sapiens 0 920
ENST00000425599 RIC3-009 protein_coding Homo_sapiens 0 453
ENST00000524799 RIC3-014 processed_transcript Homo_sapiens 0 928
ENST00000526962 RIC3-003 nonsense_mediated_decay Homo_sapiens 0 739
ENST00000528463 RIC3-005 nonsense_mediated_decay Homo_sapiens 0 863
ENST00000529271 RIC3-015 processed_transcript Homo_sapiens 0 281
ENST00000530060 RIC3-010 processed_transcript Homo_sapiens 0 739
ENST00000531450 RIC3-006 protein_coding Homo_sapiens 0 448

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