C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: tripartite motif-containing 62
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147852 Trim62-002 ENSMUSG00000041000 10090 + 4:128883580-128903565 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverMuscleENSMUST00000147852
Transcript ID Adrenal Liver Muscle
ENSMUST00000147852 2.110±0.01 0.059±0.01 0.075±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789
CIL_0002AB CIL_0002AB_0002 CGP 4:128773088-128911328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000291416 TRIM62-001 protein_coding Homo_sapiens 0 669
ENST00000485148 TRIM62-004 processed_transcript Homo_sapiens 0 625
ENST00000486583 TRIM62-005 processed_transcript Homo_sapiens 0 333
ENST00000543586 TRIM62-006 protein_coding Homo_sapiens 0 553

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