C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148119 Setd3-004 ENSMUSG00000056770 10090 - 12:108106666-108114947 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000148119
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000148119 3.817±0.45 2.378±0.29 3.771±0.13 1.941±0.29 2.737±0.17 2.303±0.49 2.997±0.72 2.704±1.49 2.167±0.02 2.355±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0002 UCNEbase 12:107085268-108123079
CIL_0005H1 CIL_0005H1_0002 CGP 12:107910403-108179314
CIL_0009CK CIL_0009CK_0002 VISTA 12:107949271-108552884
CIL_0003HD CIL_0003HD_0002 CGP 12:108106431-108203359

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331768 SETD3-001 protein_coding Homo_sapiens 0 1075
ENST00000446066 SETD3-005 nonsense_mediated_decay Homo_sapiens 0 1075
ENST00000453764 SETD3-008 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000489770 SETD3-006 retained_intron Homo_sapiens 0 497

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