C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148156 H13-005 ENSMUSG00000019188 10090 + 2:152669486-152683441 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverOvaryTestisENSMUST00000148156
Transcript ID Bladder Brain Heart Liver Ovary Testis
ENSMUST00000148156 4.235±1.13 10.945±6.14 1.070±0.00 3.139±0.40 7.728±0.33 1.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001A0 CIL_0001A0_0002 CGP 2:152626951-152708670

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335574 HM13-009 protein_coding Homo_sapiens 0 625
ENST00000340852 HM13-011 protein_coding Homo_sapiens 0 625
ENST00000344042 HM13-014 protein_coding Homo_sapiens 0 571
ENST00000398174 HM13-012 protein_coding Homo_sapiens 0 625
ENST00000460225 HM13-018 processed_transcript Homo_sapiens 0 327
ENST00000466766 HM13-015 processed_transcript Homo_sapiens 0 270
ENST00000469126 HM13-019 processed_transcript Homo_sapiens 2e-28 130
ENST00000492709 HM13-020 processed_transcript Homo_sapiens 2e-21 108
ENST00000496438 HM13-017 processed_transcript Homo_sapiens 0 693
ENST00000498035 HM13-013 protein_coding Homo_sapiens 0 769

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