C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | nucleoporin 88 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000148168  |
Nup88-004 |
ENSMUSG00000040667 |
10090 | - |
11:70943058-70969959  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00020X | CIL_00020X_0002 | CGP | 11:70790932-70943105 |
| CIL_00060J | CIL_00060J_0003 | CGP | 11:70844778-70969973 |
| CIL_00045W | CIL_00045W_0002 | CGP | 11:70943058-70977833 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000225696
|
NUP88-004 | protein_coding | Homo_sapiens | 0 | 1565 |
|
ENST00000570937
|
NUP88-007 | retained_intron | Homo_sapiens | 0 | 331 |
|
ENST00000572019
|
NUP88-009 | processed_transcript | Homo_sapiens | 0 | 270 |
|
ENST00000572290
|
NUP88-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 268 |
|
ENST00000573584
|
NUP88-001 | protein_coding | Homo_sapiens | 0 | 1738 |
|
ENST00000574087
|
NUP88-011 | retained_intron | Homo_sapiens | 4e-39 | 165 |
|
ENST00000574855
|
NUP88-012 | retained_intron | Homo_sapiens | 0 | 268 |
|
ENST00000574867
|
NUP88-002 | retained_intron | Homo_sapiens | 0 | 1744 |
|
ENST00000576708
|
NUP88-010 | nonsense_mediated_decay | Homo_sapiens | 2e-38 | 163 |
|
ENST00000576862
|
NUP88-013 | retained_intron | Homo_sapiens | 0 | 416 |
