| Transcript ID | Brain | Ovary | Placenta | Testis |
|---|---|---|---|---|
| ENSMUST00000148264 | 8.469±0.00 | 15.748±0.00 | 14.097±4.84 | 1.248±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | RAB guanine nucleotide exchange factor (GEF) 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000148264  |
Rabgef1-003 |
ENSMUSG00000025340 |
10090 | + |
5:130171824-130210442  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0005UP | CIL_0005UP_0002 | CGP | 5:130144861-130214342 |
| CIL_000256 | CIL_000256_0002 | CGP | 5:130171798-130243765 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001933 | IMP | negative regulation of protein phosphorylation |
| GO:0002686 | IMP | negative regulation of leukocyte migration |
| GO:0003677 | IEA | DNA binding |
| GO:0004842 | IDA | ubiquitin-protein transferase activity |
| GO:0005515 | IPI | protein binding |
| GO:0008270 | IEA | zinc ion binding |
| GO:0016567 | IDA | protein ubiquitination |
| GO:0031982 | IDA | vesicle |
| GO:0033004 | IMP | negative regulation of mast cell activation |
| GO:0043305 | IMP | negative regulation of mast cell degranulation |
| GO:0046580 | IMP | negative regulation of Ras protein signal transduction |
| GO:0048261 | IMP | negative regulation of receptor-mediated endocytosis |
| GO:0050728 | IMP | negative regulation of inflammatory response |
| GO:0060368 | IMP | regulation of Fc receptor mediated stimulatory signaling pathway |
| GO:1900165 | IMP | negative regulation of interleukin-6 secretion |
| GO:1900235 | IMP | negative regulation of Kit signaling pathway |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000284957
|
RABGEF1-001 | protein_coding | Homo_sapiens | 0 | 944 |
|
ENST00000380828
|
RABGEF1-201 | protein_coding | Homo_sapiens | 0 | 944 |
|
ENST00000411606
|
GS1-124K5.2-003 | transcribed_unprocessed_pseudogene | Homo_sapiens | 0 | 231 |
|
ENST00000428370
|
GS1-124K5.12-001 | unprocessed_pseudogene | Homo_sapiens | 0 | 296 |
|
ENST00000437078
|
RABGEF1-202 | protein_coding | Homo_sapiens | 0 | 440 |
|
ENST00000439720
|
RABGEF1-003 | protein_coding | Homo_sapiens | 0 | 944 |
|
ENST00000442563
|
RABGEF1-005 | protein_coding | Homo_sapiens | 0 | 226 |
|
ENST00000449786
|
AC005077.7-001 | unprocessed_pseudogene | Homo_sapiens | 0 | 307 |
|
ENST00000450873
|
RABGEF1-002 | protein_coding | Homo_sapiens | 0 | 944 |
|
ENST00000484547
|
RABGEF1-004 | processed_transcript | Homo_sapiens | 0 | 483 |
|
ENST00000503687
|
KCTD7-004 | nonsense_mediated_decay | Homo_sapiens | 0 | 483 |
|
ENST00000510829
|
RABGEF1-203 | protein_coding | Homo_sapiens | 0 | 438 |
|
ENST00000607882
|
RABGEF1-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 440 |
