C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148495 Hfm1-004 ENSMUSG00000043410 10090 - 5:106840192-106895327 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverLungMuscleOvaryENSMUST00000148495
Transcript ID Adipose Bladder Brain Liver Lung Muscle Ovary
ENSMUST00000148495 0.086±0.00 0.005±0.00 0.040±0.00 0.014±0.01 0.036±0.00 0.006±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000906 CIL_000906_0002 VISTA 5:106264330-106866018
CIL_000699 CIL_000699_0002 CGP 5:106616739-106926321
CIL_00069J CIL_00069J_0002 CGP 5:106840192-106984432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000712 IMP resolution of meiotic recombination intermediates
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370425 HFM1-002 protein_coding Homo_sapiens 0 1705
ENST00000430465 HFM1-008 protein_coding Homo_sapiens 0 963
ENST00000462405 HFM1-009 processed_transcript Homo_sapiens 0 1908
ENST00000497520 HFM1-004 processed_transcript Homo_sapiens 0 213

Loading