C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small EDRK-rich factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148575 Serf2-006 ENSMUSG00000074884 10090 + 2:121449412-121458313 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000148575
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000148575 79.262±0.00 94.369±30.23 115.628±77.22 62.138±3.11 178.272±68.16 159.899±67.26 95.825±108.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249786 SERF2-002 protein_coding Homo_sapiens 0 235
ENST00000339624 SERF2-005 protein_coding Homo_sapiens 0 235
ENST00000381359 SERF2-001 protein_coding Homo_sapiens 0 235
ENST00000402131 SERF2-006 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000403425 SERF2-007 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000409291 SERF2-013 protein_coding Homo_sapiens 0 239
ENST00000409614 SERF2-009 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000409617 SERF2-016 nonsense_mediated_decay Homo_sapiens 0 695
ENST00000409646 SERF2-014 protein_coding Homo_sapiens 0 235
ENST00000409960 SERF2-011 protein_coding Homo_sapiens 0 235
ENST00000430901 SERF2-015 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000445816 SERF2-003 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000448830 SERF2-010 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000475927 SERF2-008 retained_intron Homo_sapiens 2.00386e-43 180
ENST00000486144 SERF2-004 retained_intron Homo_sapiens 0 235

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