C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3a, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148665 Sf3a2-001 ENSMUSG00000020211 10090 + 10:80798198-80804924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000148665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000148665 9.629±1.49 24.485±1.71 13.960±1.92 22.633±10.04 15.365±4.04 11.849±1.56 4.386±1.49 6.513±0.90 11.285±8.95 11.495±1.24 8.399±1.25 22.518±6.32 14.226±6.16 11.423±3.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T8 CIL_0001T8_0002 CGP 10:80755206-80798626
CIL_0001II CIL_0001II_0002 CGP 10:80796100-80804924
CIL_0001IF CIL_0001IF_0002 CGP 10:80798198-80807648

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221494 SF3A2-001 protein_coding Homo_sapiens 0 1188
ENST00000503372 RP11-605F14.2-001 processed_pseudogene Homo_sapiens 0 326
ENST00000586396 SF3A2-002 protein_coding Homo_sapiens 0 472
ENST00000592314 SF3A2-006 retained_intron Homo_sapiens 0 470
ENST00000592839 SF3A2-003 retained_intron Homo_sapiens 0 405

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