C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin interaction motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148702 Uimc1-006 ENSMUSG00000025878 10090 - 13:55028195-55100254 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000148702
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000148702 1.352±0.00 1.382±0.00 0.409±0.00 0.613±0.11 1.244±0.60 1.123±0.00 0.778±0.07 2.784±1.55 1.496±0.16 0.940±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0001A8 CIL_0001A8_0002 CGP 13:55005985-55100300
CIL_0000OX CIL_0000OX_0004 CGP 13:55027880-55134825

Gene Ontology

GO IDEvidence TypeGO Description
GO:0046965 IDA retinoid X receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377227 UIMC1-001 protein_coding Homo_sapiens 0 1580
ENST00000417486 UIMC1-002 retained_intron Homo_sapiens 0 438
ENST00000503273 UIMC1-010 processed_transcript Homo_sapiens 0 449
ENST00000505879 UIMC1-009 processed_transcript Homo_sapiens 1e-16 90
ENST00000506128 UIMC1-006 protein_coding Homo_sapiens 0 937
ENST00000507513 UIMC1-007 protein_coding Homo_sapiens 0 300
ENST00000509236 UIMC1-014 protein_coding Homo_sapiens 0 568
ENST00000510698 UIMC1-201 protein_coding Homo_sapiens 0 643
ENST00000511320 UIMC1-004 protein_coding Homo_sapiens 0 1580
ENST00000512031 UIMC1-003 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000515488 UIMC1-013 retained_intron Homo_sapiens 0 438

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