C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neighbor of Brca1 gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149019 Nbr1-006 ENSMUSG00000017119 10090 + 11:101567119-101581951 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000149019
Transcript ID Bladder Brain Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000149019 7.724±0.60 10.495±0.00 4.069±0.00 6.006±0.00 6.551±1.04 5.197±0.72 12.926±1.79 11.885±3.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040M CIL_00040M_0002 CGP 11:101488764-101581951
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_0000KX CIL_0000KX_0003 CGP 11:101552149-101591788

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341165 NBR1-001 protein_coding Homo_sapiens 0 1498
ENST00000422280 NBR1-201 protein_coding Homo_sapiens 0 1498
ENST00000542611 NBR1-002 protein_coding Homo_sapiens 0 1498
ENST00000585505 NBR1-005 retained_intron Homo_sapiens 0 1024
ENST00000589872 NBR1-004 protein_coding Homo_sapiens 0 1498
ENST00000590996 NBR1-003 protein_coding Homo_sapiens 0 1498

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