C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149024 Snx10-003 ENSMUSG00000038301 10090 + 6:51544566-51589043 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainOvaryPlacentaTestisENSMUST00000149024
Transcript ID Adrenal Brain Ovary Placenta Testis
ENSMUST00000149024 0.457±0.00 24.131±0.00 4.367±2.98 21.929±9.21 0.636±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0002CN CIL_0002CN_0002 CGP 6:51470360-51590679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0035091 IBA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338523 SNX10-002 protein_coding Homo_sapiens 0 492
ENST00000396376 SNX10-001 protein_coding Homo_sapiens 0 492
ENST00000409367 SNX10-007 protein_coding Homo_sapiens 0 479
ENST00000409838 SNX10-004 protein_coding Homo_sapiens 0 494
ENST00000416246 SNX10-005 protein_coding Homo_sapiens 0 361
ENST00000446848 SNX10-201 protein_coding Homo_sapiens 0 492
ENST00000462993 SNX10-003 processed_transcript Homo_sapiens 0 364
ENST00000619420 SNX10-202 protein_coding Homo_sapiens 0 492

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