C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149087 Hdac5-020 ENSMUSG00000008855 10090 - 11:102195749-102218929 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000149087
Transcript ID Breast
ENSMUST00000149087 1.471±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J5 CIL_0005J5_0002 CGP 11:102189620-102230166
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000036277 hdac4-201 protein_coding Danio_rerio 6e-22 111
ENSDART00000124870 hdac4-001 protein_coding Danio_rerio 6e-22 111
ENSDART00000111435 hdac5-201 protein_coding Danio_rerio 1e-18 100
ENSDART00000157378 hdac5-001 protein_coding Danio_rerio 1e-18 100
ENST00000080059 HDAC7-001 protein_coding Homo_sapiens 0 368
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 0 2135
ENST00000336057 HDAC5-001 protein_coding Homo_sapiens 0 1059
ENST00000354334 HDAC7-002 protein_coding Homo_sapiens 0 368
ENST00000380610 HDAC7-029 protein_coding Homo_sapiens 0 368
ENST00000399687 ABCD1P4-001 unprocessed_pseudogene Homo_sapiens 0.00004 53
ENST00000427332 HDAC7-013 protein_coding Homo_sapiens 0 368
ENST00000459625 HDAC7-007 retained_intron Homo_sapiens 4e-29 135
ENST00000470668 HDAC7-005 retained_intron Homo_sapiens 0 353
ENST00000477203 HDAC7-030 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000477937 HDAC7-026 processed_transcript Homo_sapiens 1e-33 147
ENST00000488927 HDAC7-027 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000548080 HDAC7-031 protein_coding Homo_sapiens 4e-38 163
ENST00000548938 HDAC7-003 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000552960 HDAC7-028 protein_coding Homo_sapiens 0 368
ENST00000586339 HDAC5-013 retained_intron Homo_sapiens 0 366
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 0 2135
ENST00000587776 HDAC5-011 retained_intron Homo_sapiens 0 549
ENST00000588261 HDAC5-010 protein_coding Homo_sapiens 0 497
ENST00000588419 HDAC5-012 retained_intron Homo_sapiens 0 959
ENST00000588703 HDAC5-007 protein_coding Homo_sapiens 0 340
ENST00000591714 HDAC5-009 protein_coding Homo_sapiens 0 481
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 0 1832
ENST00000593013 HDAC5-005 retained_intron Homo_sapiens 0 782

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