C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149166 Slc11a1-009 ENSMUSG00000026177 10090 + 1:74383341-74384173 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000149166
Transcript ID Testis
ENSMUST00000149166 0.577±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054V CIL_00054V_0002 CGP 1:74362108-74386062
CIL_0005VF CIL_0005VF_0002 CGP 1:74375195-74397285

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233202 SLC11A1-001 protein_coding Homo_sapiens 0 370
ENST00000354352 SLC11A1-003 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000465984 SLC11A1-004 retained_intron Homo_sapiens 0 370
ENST00000468221 SLC11A1-009 retained_intron Homo_sapiens 0 217
ENST00000490872 SLC11A1-019 retained_intron Homo_sapiens 0 217
ENST00000494322 SLC11A1-010 retained_intron Homo_sapiens 0 217
ENST00000539932 SLC11A1-007 nonsense_mediated_decay Homo_sapiens 0 217

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