C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sterol regulatory element binding transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149238 Srebf1-001 ENSMUSG00000020538 10090 - 11:60203101-60204290 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000149238
Transcript ID Placenta
ENSMUST00000149238 40.675±7.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_0000NM CIL_0000NM_0002 CGP 11:59970614-60199197
CIL_00003U CIL_00003U_0003 CGP 11:60105013-60222581
CIL_00003N CIL_00003N_0003 CGP 11:60199089-60352905

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261646 SREBF1-002 protein_coding Homo_sapiens 0 534
ENST00000355815 SREBF1-003 protein_coding Homo_sapiens 0 534
ENST00000395751 SREBF1-018 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000395756 SREBF1-005 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000395757 SREBF1-004 protein_coding Homo_sapiens 0 534
ENST00000469356 SREBF1-010 retained_intron Homo_sapiens 0 394
ENST00000471445 SREBF1-011 retained_intron Homo_sapiens 0 442
ENST00000580540 SREBF1-019 retained_intron Homo_sapiens 0.00000000000001 84

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