C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6265
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149263 Gm6265-001 ENSMUSG00000066491 10090 - 12:56373593-56373823 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMusclePlacentaENSMUST00000149263
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Placenta
ENSMUST00000149263 3.524±3.34 1.121±0.00 0.730±0.00 0.594±0.10 0.667±0.00 2.006±0.75 0.521±0.00 0.228±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_0007WQ CIL_0007WQ_0002 VISTA 12:55814128-56416274
CIL_00092P CIL_00092P_0002 VISTA 12:56086861-56688474
CIL_0008XR CIL_0008XR_0002 VISTA 12:56140796-56741827
CIL_0008R1 CIL_0008R1_0002 VISTA 12:56154748-56756277
CIL_00091S CIL_00091S_0002 VISTA 12:56158078-56760488
CIL_0007TC CIL_0007TC_0002 VISTA 12:56181967-56783344
CIL_0007XY CIL_0007XY_0002 VISTA 12:56220183-56821029

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297564 COX6C-003 protein_coding Homo_sapiens 3e-40 169
ENST00000401679 RP11-129H15.1-001 processed_pseudogene Homo_sapiens 9e-27 122
ENST00000416832 COX6CP10-001 processed_pseudogene Homo_sapiens 3.00004e-41 171
ENST00000437445 RP3-461P17.6-001 processed_pseudogene Homo_sapiens 1e-26 122
ENST00000444980 COX6CP2-001 processed_pseudogene Homo_sapiens 7.00649e-43 176
ENST00000490840 COX6CP6-001 processed_pseudogene Homo_sapiens 2.00386e-43 178
ENST00000517682 COX6C-005 protein_coding Homo_sapiens 3e-40 169
ENST00000518171 COX6C-002 protein_coding Homo_sapiens 4.00001e-40 169
ENST00000520271 COX6C-007 protein_coding Homo_sapiens 3e-40 169
ENST00000520468 COX6C-001 protein_coding Homo_sapiens 7e-40 169
ENST00000520517 COX6C-009 nonsense_mediated_decay Homo_sapiens 3e-40 169
ENST00000522934 COX6C-010 nonsense_mediated_decay Homo_sapiens 3e-40 169
ENST00000522940 COX6C-006 protein_coding Homo_sapiens 4.00001e-40 169
ENST00000523016 COX6C-004 protein_coding Homo_sapiens 5e-40 169
ENST00000524245 COX6C-008 protein_coding Homo_sapiens 3e-40 169
ENST00000555293 COX6CP11-001 processed_pseudogene Homo_sapiens 4e-36 154
ENST00000603667 COX6CP16-001 processed_pseudogene Homo_sapiens 2e-28 128
ENST00000605137 RP11-290D2.5-001 processed_pseudogene Homo_sapiens 2e-38 161

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