C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC004004
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149405 BC004004-004 ENSMUSG00000052712 10090 + 17:29274104-29301525 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000149405
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000149405 8.576±0.49 25.921±2.91 16.442±2.41 3.723±0.00 14.026±2.70 16.105±4.26 36.620±7.73 51.510±7.88 38.358±22.55 12.040±3.03 14.408±3.91 16.232±8.86 9.584±6.24 1.744±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0002Y6 CIL_0002Y6_0002 CGP 17:29250803-29302881
CIL_0002Y9 CIL_0002Y9_0002 CGP 17:29268788-29329413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 ISS plasma membrane
GO:0016021 IEA integral component of membrane
GO:0042060 ISS wound healing
GO:0045787 ISS positive regulation of cell cycle
GO:0050673 ISS epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355190 C6orf89-002 protein_coding Homo_sapiens 0 1098
ENST00000359359 C6orf89-001 protein_coding Homo_sapiens 0 1101
ENST00000373685 C6orf89-003 protein_coding Homo_sapiens 0 1120
ENST00000480824 C6orf89-004 protein_coding Homo_sapiens 0 1099

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