C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhophilin, Rho GTPase binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149407 Rhpn1-005 ENSMUSG00000022580 10090 + 15:75704329-75714408 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryENSMUST00000149407
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary
ENSMUST00000149407 0.061±0.00 0.146±0.02 0.084±0.00 0.135±0.00 0.062±0.03 1.604±0.11 0.022±0.00 0.368±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0002 VISTA 15:75534812-76135772
CIL_0001NH CIL_0001NH_0002 CGP 15:75657035-75714410
CIL_0001NI CIL_0001NI_0002 CGP 15:75704280-75747922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 IPI small GTPase regulator activity
GO:0007165 IEA signal transduction
GO:0050790 IPI regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000289013 RHPN1-001 protein_coding Homo_sapiens 0 869
ENST00000522335 RHPN1-002 retained_intron Homo_sapiens 0 846
ENST00000620174 RHPN1-201 protein_coding Homo_sapiens 0 846

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