C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149854 Gpcpd1-003 ENSMUSG00000027346 10090 - 2:132529082-132578235 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000149854
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000149854 4.727±0.00 2.051±0.00 5.488±0.81 2.979±1.80 1.335±0.33 0.559±0.00 6.375±2.27 4.561±2.14 3.760±1.23 4.960±0.00 2.042±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041F CIL_00041F_0002 CGP 2:132337733-132587729
CIL_00057F CIL_00057F_0002 CGP 2:132529082-132751055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0007519 IMP skeletal muscle tissue development
GO:0008152 IDA metabolic process
GO:0047389 IDA glycerophosphocholine phosphodiesterase activity
GO:2001070 IEA starch binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379019 GPCPD1-001 protein_coding Homo_sapiens 0 2767
ENST00000418646 GPCPD1-004 protein_coding Homo_sapiens 0 1286
ENST00000433031 RP11-1217F2.1-001 unprocessed_pseudogene Homo_sapiens 0 1764
ENST00000473797 GPCPD1-005 processed_transcript Homo_sapiens 0 231
ENST00000481038 GPCPD1-002 processed_transcript Homo_sapiens 0 2767
ENST00000481690 GPCPD1-003 processed_transcript Homo_sapiens 0 809

Loading