C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vascular endothelial growth factor A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150327 Vegfa-007 ENSMUSG00000023951 10090 - 17:46018479-46024864 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENSMUST00000150327
Transcript ID Ovary Testis
ENSMUST00000150327 49.401±0.00 0.914±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0002 VISTA 17:45708824-46310190
CIL_00049T CIL_00049T_0002 CGP 17:46016993-46128910

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230480 VEGFA-009 protein_coding Homo_sapiens 0 403
ENST00000324450 VEGFA-011 protein_coding Homo_sapiens 1e-27 128
ENST00000372055 VEGFA-004 protein_coding Homo_sapiens 6e-36 156
ENST00000372064 VEGFA-002 protein_coding Homo_sapiens 0 562
ENST00000372067 VEGFA-001 protein_coding Homo_sapiens 0 409
ENST00000372077 VEGFA-019 protein_coding Homo_sapiens 0 562
ENST00000413642 VEGFA-012 protein_coding Homo_sapiens 6e-36 156
ENST00000417285 VEGFA-014 protein_coding Homo_sapiens 2e-35 154
ENST00000425836 VEGFA-003 protein_coding Homo_sapiens 0 409
ENST00000457104 VEGFA-022 protein_coding Homo_sapiens 4e-28 128
ENST00000476772 VEGFA-005 retained_intron Homo_sapiens 6e-27 126
ENST00000480614 VEGFA-007 retained_intron Homo_sapiens 0 409
ENST00000482630 VEGFA-013 protein_coding Homo_sapiens 2e-35 154
ENST00000493786 VEGFA-010 retained_intron Homo_sapiens 0 451
ENST00000497139 VEGFA-008 retained_intron Homo_sapiens 0 880
ENST00000518538 VEGFA-017 retained_intron Homo_sapiens 9e-36 154
ENST00000518689 VEGFA-023 protein_coding Homo_sapiens 3e-36 156
ENST00000518824 VEGFA-024 protein_coding Homo_sapiens 1e-35 154
ENST00000519767 VEGFA-015 protein_coding Homo_sapiens 5e-36 156
ENST00000520948 VEGFA-020 protein_coding Homo_sapiens 0 409
ENST00000523125 VEGFA-025 protein_coding Homo_sapiens 9e-36 154
ENST00000523873 VEGFA-021 protein_coding Homo_sapiens 4e-36 156
ENST00000523950 VEGFA-018 protein_coding Homo_sapiens 0 357
ENST00000611736 VEGFA-201 protein_coding Homo_sapiens 0 409
ENST00000615393 VEGFA-202 protein_coding Homo_sapiens 0 562
ENST00000617771 VEGFA-203 protein_coding Homo_sapiens 0 409
ENST00000621747 VEGFA-204 protein_coding Homo_sapiens 0 409

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