C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150350 Rpl13a-001 ENSMUSG00000074129 10090 - 7:45125558-45128748 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000150350
Transcript ID Adipose Bladder Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000150350 88.120±6.82 130.983±16.84 156.597±8.15 128.603±38.85 61.974±11.11 192.921±174.32 36.401±8.80 141.570±105.60 221.983±99.89 23.847±1.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0017148 IDA negative regulation of translation
GO:0030529 ISO ribonucleoprotein complex
GO:0032496 IMP response to lipopolysaccharide
GO:0032844 IMP regulation of homeostatic process
GO:0048246 IMP macrophage chemotaxis
GO:0060425 IMP lung morphogenesis
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391857 RPL13A-001 protein_coding Homo_sapiens 0 817
ENST00000430133 RPL13AP6-001 processed_pseudogene Homo_sapiens 0 638
ENST00000439189 RPL13AP5-001 processed_pseudogene Homo_sapiens 0 726
ENST00000467825 RPL13A-009 protein_coding Homo_sapiens 0 652
ENST00000472481 RPL13A-007 retained_intron Homo_sapiens 0 451
ENST00000476268 RPL13A-003 retained_intron Homo_sapiens 1e-23 115
ENST00000477613 RPL13A-008 processed_transcript Homo_sapiens 0 678
ENST00000478813 RP11-941H19.1-001 processed_pseudogene Homo_sapiens 0 520
ENST00000479992 RPL13A-006 retained_intron Homo_sapiens 0 231
ENST00000484279 RPL13A-004 nonsense_mediated_decay Homo_sapiens 0 627
ENST00000486930 RPL13A-005 retained_intron Homo_sapiens 0 316
ENST00000487479 RPL13AP3-001 transcribed_processed_pseudogene Homo_sapiens 0 601
ENST00000488946 RPL13A-002 retained_intron Homo_sapiens 2e-23 115
ENST00000494676 RPL13AP3-002 processed_transcript Homo_sapiens 0 586
ENST00000495623 RP11-627K11.1-001 processed_pseudogene Homo_sapiens 0 676
ENST00000534211 RP11-140L24.3-001 processed_pseudogene Homo_sapiens 0 392
ENST00000624069 RPL13A-013 nonsense_mediated_decay Homo_sapiens 0 750

Loading