C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 1110004F10 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151254 1110004F10Rik-003 ENSMUSG00000030663 10090 + 7:116093366-116105210 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartOvaryTestisENSMUST00000151254
Transcript ID Heart Ovary Testis
ENSMUST00000151254 2.133±0.00 10.092±0.00 3.278±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081X CIL_00081X_0002 VISTA 7:115524528-116125832
CIL_0008LR CIL_0008LR_0002 VISTA 7:115564594-116167473
CIL_000836 CIL_000836_0002 VISTA 7:115904293-116509702
CIL_0003ZQ CIL_0003ZQ_0002 CGP 7:116093301-116308376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228136 C11orf58-001 protein_coding Homo_sapiens 0 944
ENST00000524439 C11orf58-004 protein_coding Homo_sapiens 0 209
ENST00000524461 C11orf58-002 retained_intron Homo_sapiens 0 688
ENST00000525106 C11orf58-008 retained_intron Homo_sapiens 0 231
ENST00000525256 C11orf58-007 retained_intron Homo_sapiens 0 340
ENST00000525684 C11orf58-006 protein_coding Homo_sapiens 0 255
ENST00000527893 C11orf58-011 processed_transcript Homo_sapiens 0 231
ENST00000528634 C11orf58-005 protein_coding Homo_sapiens 0 385
ENST00000531658 C11orf58-003 retained_intron Homo_sapiens 0 667
ENST00000555080 RP11-305B6.1-001 processed_pseudogene Homo_sapiens 0 453

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