C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151452 Pkp4-013 ENSMUSG00000026991 10090 + 2:59322616-59355205 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000151452
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000151452 9.978±1.08 54.606±0.00 3.531±0.00 3.208±0.39 0.850±0.14 11.473±6.59 14.330±8.69 5.643±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389757 PKP4-001 protein_coding Homo_sapiens 0 1580
ENST00000389759 PKP4-002 protein_coding Homo_sapiens 0 2833
ENST00000421462 PKP4-005 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000426248 PKP4-003 nonsense_mediated_decay Homo_sapiens 0 2542
ENST00000426801 PKP4P1-001 unprocessed_pseudogene Homo_sapiens 0 1290
ENST00000452162 PKP4-004 nonsense_mediated_decay Homo_sapiens 0 640
ENST00000480171 PKP4-006 retained_intron Homo_sapiens 0 2410
ENST00000483881 PKP4-014 retained_intron Homo_sapiens 0 414
ENST00000486254 PKP4-007 retained_intron Homo_sapiens 0 771
ENST00000492496 PKP4-016 retained_intron Homo_sapiens 0 427
ENST00000495123 PKP4-015 processed_transcript Homo_sapiens 0 512

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