C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152796 Ythdf2-001 ENSMUSG00000040025 10090 - 4:132184912-132212303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000152796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000152796 4.471±2.33 12.121±2.30 3.520±0.46 8.371±0.10 5.550±2.59 7.666±1.41 1.290±0.31 3.551±1.15 4.595±1.22 5.592±0.77 1.075±0.47 10.085±3.44 4.412±1.23 2.211±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0043488 ISS regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:1990247 ISS N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000025171 ythdf1-001 protein_coding Danio_rerio 0 374
ENST00000373812 YTHDF2-001 protein_coding Homo_sapiens 0 4165
ENST00000468863 YTHDF2-005 processed_transcript Homo_sapiens 0 785
ENST00000474884 YTHDF2-003 protein_coding Homo_sapiens 0 1042
ENST00000475796 YTHDF2-004 processed_transcript Homo_sapiens 0 488
ENST00000476976 YTHDF2-007 processed_transcript Homo_sapiens 0 918
ENST00000478283 YTHDF2-002 processed_transcript Homo_sapiens 0 2981
ENST00000496288 YTHDF2-006 protein_coding Homo_sapiens 0 1229
ENST00000541996 YTHDF2-008 protein_coding Homo_sapiens 0 3843
ENST00000542507 YTHDF2-201 protein_coding Homo_sapiens 0 3916
ENST00000604759 RP11-407N17.6-001 processed_pseudogene Homo_sapiens 0 1895
ENST00000621244 YTHDF2-202 protein_coding Homo_sapiens 0 3136

Loading