C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 16060
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153140 Gm16060-001 ENSMUSG00000086123 10090 - 3:138828685-138829162 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153140
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153140 0.376±0.00 0.618±0.24 0.194±0.00 0.351±0.09 0.278±0.00 0.267±0.12 0.075±0.02 0.418±0.13 0.146±0.00 0.345±0.06 0.130±0.14 0.158±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0002 VISTA 3:138442669-139045155

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 538
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 538
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 538
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 538
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 532
ENST00000401418 RPL21P28-001 processed_pseudogene Homo_sapiens 0 521
ENST00000402896 RPL21P67-001 processed_pseudogene Homo_sapiens 0 361
ENST00000404609 RP3-393E18.1-001 processed_pseudogene Homo_sapiens 0 460
ENST00000406094 RPL21P65-001 processed_pseudogene Homo_sapiens 0 305
ENST00000422509 RP11-405L18.4-001 processed_pseudogene Homo_sapiens 0 401
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 490
ENST00000439130 RP11-244N20.7-001 processed_pseudogene Homo_sapiens 0 377
ENST00000446654 RPL21P23-001 processed_pseudogene Homo_sapiens 0 287
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 477
ENST00000454107 RP11-57G10.1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000460608 CTD-2301A4.3-001 processed_pseudogene Homo_sapiens 0 399
ENST00000461458 RPL21P11-001 processed_pseudogene Homo_sapiens 0 499
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000465598 RPL21P71-001 processed_pseudogene Homo_sapiens 0 222
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 305
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000472300 RP11-16F15.2-001 processed_pseudogene Homo_sapiens 0 505
ENST00000473558 RPL21-002 retained_intron Homo_sapiens 0 191
ENST00000473808 RP11-254G11.1-001 processed_pseudogene Homo_sapiens 0 475
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 460
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 448
ENST00000483765 RPL21-008 nonsense_mediated_decay Homo_sapiens 8e-21 104
ENST00000485147 RP11-407P2.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 510
ENST00000486753 RP11-48B14.1-001 processed_pseudogene Homo_sapiens 0 494
ENST00000488305 RPL21P13-001 processed_pseudogene Homo_sapiens 0 396
ENST00000491435 RP11-50D9.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000493028 RPL21P123-001 transcribed_processed_pseudogene Homo_sapiens 0 294
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 431
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 451
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 538
ENST00000497954 RPL21P4-001 processed_pseudogene Homo_sapiens 0 473
ENST00000510061 AC006445.7-001 processed_pseudogene Homo_sapiens 0 370
ENST00000515262 HSPA4L-005 processed_transcript Homo_sapiens 0 243
ENST00000557463 RPL21P7-001 processed_pseudogene Homo_sapiens 0 433
ENST00000559810 RPL21P12-001 processed_pseudogene Homo_sapiens 0 327
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000610672 MED22-007 protein_coding Homo_sapiens 0 377

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