C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | CDK5 regulatory subunit associated protein 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000153305  |
Cdk5rap3-007 |
ENSMUSG00000018669 |
10090 | - |
11:96911984-96916429  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00097B | CIL_00097B_0002 | VISTA | 11:96441475-97042608 |
| CIL_0007WA | CIL_0007WA_0002 | VISTA | 11:96526222-97127190 |
| CIL_0007RQ | CIL_0007RQ_0002 | VISTA | 11:96583318-97187851 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0045944 | IGI | positive regulation of transcription from RNA polymerase II promoter |
| GO:0071569 | ISO | protein ufmylation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000338399
|
CDK5RAP3-001 | protein_coding | Homo_sapiens | 0 | 451 |
|
ENST00000445194
|
RP5-854E16.2-001 | processed_pseudogene | Homo_sapiens | 0 | 385 |
|
ENST00000536708
|
CDK5RAP3-010 | protein_coding | Homo_sapiens | 0 | 422 |
|
ENST00000577442
|
CDK5RAP3-020 | retained_intron | Homo_sapiens | 0 | 268 |
|
ENST00000577664
|
CDK5RAP3-034 | nonsense_mediated_decay | Homo_sapiens | 0 | 422 |
|
ENST00000578018
|
CDK5RAP3-012 | protein_coding | Homo_sapiens | 0 | 422 |
|
ENST00000578134
|
CDK5RAP3-024 | processed_transcript | Homo_sapiens | 0 | 424 |
|
ENST00000578525
|
CDK5RAP3-025 | nonsense_mediated_decay | Homo_sapiens | 0 | 451 |
|
ENST00000578733
|
CDK5RAP3-015 | retained_intron | Homo_sapiens | 0 | 241 |
|
ENST00000579175
|
CDK5RAP3-037 | protein_coding | Homo_sapiens | 0 | 451 |
|
ENST00000579605
|
CDK5RAP3-022 | nonsense_mediated_decay | Homo_sapiens | 0 | 453 |
|
ENST00000579632
|
CDK5RAP3-011 | protein_coding | Homo_sapiens | 0 | 422 |
|
ENST00000579853
|
CDK5RAP3-014 | retained_intron | Homo_sapiens | 0 | 268 |
|
ENST00000580287
|
CDK5RAP3-008 | retained_intron | Homo_sapiens | 0 | 451 |
|
ENST00000580391
|
CDK5RAP3-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 411 |
|
ENST00000580670
|
CDK5RAP3-009 | nonsense_mediated_decay | Homo_sapiens | 0 | 405 |
|
ENST00000581160
|
CDK5RAP3-023 | processed_transcript | Homo_sapiens | 0 | 268 |
|
ENST00000581708
|
CDK5RAP3-021 | processed_transcript | Homo_sapiens | 0 | 268 |
|
ENST00000583182
|
CDK5RAP3-036 | retained_intron | Homo_sapiens | 0 | 424 |
|
ENST00000583352
|
CDK5RAP3-017 | protein_coding | Homo_sapiens | 0 | 300 |
|
ENST00000584042
|
CDK5RAP3-018 | retained_intron | Homo_sapiens | 0 | 241 |
|
ENST00000584063
|
CDK5RAP3-004 | retained_intron | Homo_sapiens | 0 | 453 |
|
ENST00000584168
|
CDK5RAP3-006 | retained_intron | Homo_sapiens | 0 | 407 |
|
ENST00000584525
|
CDK5RAP3-026 | retained_intron | Homo_sapiens | 0 | 268 |
|
ENST00000584592
|
CDK5RAP3-035 | processed_transcript | Homo_sapiens | 0 | 239 |
|
ENST00000584991
|
CDK5RAP3-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 438 |
|
ENST00000585163
|
CDK5RAP3-005 | retained_intron | Homo_sapiens | 0 | 451 |
