C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cell cycle regulation defective homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153397 Hira-003 ENSMUSG00000022702 10090 + 16:18877270-18935080 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaENSMUST00000153397
Transcript ID Brain Breast Ovary Placenta
ENSMUST00000153397 13.267±0.00 4.540±0.00 11.937±0.00 20.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0005F0 CIL_0005F0_0002 CGP 16:18836584-18956247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001649 IGI osteoblast differentiation
GO:0005515 IPI protein binding
GO:0007369 IMP gastrulation
GO:0042692 IGI muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006215 hira-201 protein_coding Danio_rerio 0 726
ENSDART00000132164 hira-001 protein_coding Danio_rerio 0 726
ENST00000263208 HIRA-001 protein_coding Homo_sapiens 0 2355
ENST00000340170 HIRA-002 protein_coding Homo_sapiens 0 2350
ENST00000452818 HIRA-004 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000464189 HIRA-003 processed_transcript Homo_sapiens 0 555
ENST00000509549 C22orf39-003 nonsense_mediated_decay Homo_sapiens 0 2093

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