C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: villin-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153454 Vill-003 ENSMUSG00000038775 10090 + 9:119052778-119071525 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000153454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153454 0.919±0.22 0.085±0.00 2.315±1.15 0.120±0.03 2.858±0.32 0.726±0.17 0.069±0.04 0.041±0.01 0.590±0.00 0.042±0.02 1.084±0.45 0.822±0.29 0.265±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CZ CIL_0008CZ_0002 VISTA 9:118558597-119161666
CIL_00099X CIL_00099X_0002 VISTA 9:118563323-119168147
CIL_0005AN CIL_0005AN_0002 CGP 9:118926453-119071525
CIL_0005A4 CIL_0005A4_0002 CGP 9:119052778-119093496

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283713 VILL-001 protein_coding Homo_sapiens 0 1269
ENST00000383759 VILL-201 protein_coding Homo_sapiens 0 1269
ENST00000412008 VILL-009 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000463080 VILL-010 retained_intron Homo_sapiens 0 599
ENST00000465644 VILL-002 protein_coding Homo_sapiens 0 640
ENST00000484717 VILL-004 retained_intron Homo_sapiens 0 1031
ENST00000486616 VILL-005 retained_intron Homo_sapiens 0 351
ENST00000488209 VILL-011 retained_intron Homo_sapiens 0 339
ENST00000492491 VILL-007 protein_coding Homo_sapiens 0 339

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