C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: STE20-related kinase adaptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153990 Stradb-003 ENSMUSG00000026027 10090 + 1:58973522-58995122 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverMuscleOvaryPlacentaENSMUST00000153990
Transcript ID Bladder Brain Breast Heart Liver Muscle Ovary Placenta
ENSMUST00000153990 1.883±0.65 6.354±0.16 2.137±0.00 2.866±0.18 3.790±0.86 22.256±2.96 1.919±0.17 3.187±2.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089O CIL_00089O_0002 VISTA 1:58652904-59256413
CIL_0000JJ CIL_0000JJ_0003 CGP 1:58900449-58995715
CIL_00020Q CIL_00020Q_0002 CGP 1:58973522-59094900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IDA cell morphogenesis
GO:0004672 IDA protein kinase activity
GO:0006468 IDA protein phosphorylation
GO:0007010 TAS cytoskeleton organization
GO:0007254 IDA JNK cascade
GO:2001240 IDA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194530 STRADB-001 protein_coding Homo_sapiens 0 1633
ENST00000392249 STRADB-003 protein_coding Homo_sapiens 0 1528
ENST00000412769 RP11-329A14.1-001 processed_pseudogene Homo_sapiens 0 1415
ENST00000415688 STRADB-009 protein_coding Homo_sapiens 0 390
ENST00000447698 STRADB-005 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000458269 STRADB-006 protein_coding Homo_sapiens 0 815
ENST00000465990 SPATA6-009 processed_transcript Homo_sapiens 6e-30 134
ENST00000466770 STRADB-010 retained_intron Homo_sapiens 0 335
ENST00000468123 STRADB-008 retained_intron Homo_sapiens 0 534
ENST00000478954 STRADBP1-001 processed_pseudogene Homo_sapiens 0 1315
ENST00000484098 STRADB-011 retained_intron Homo_sapiens 0 658
ENST00000498648 STRADB-007 retained_intron Homo_sapiens 0 763

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