C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154641 Hoxa9-004 ENSMUSG00000038227 10090 - 6:52223963-52231089 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverTestisENSMUST00000154641
Transcript ID Brain Liver Testis
ENSMUST00000154641 0.058±0.00 0.080±0.00 0.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PA CIL_0003PA_0002 CGP 6:52214491-52231089

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000153363 protein_coding Danio_rerio 0.00000000003 73
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.00000007 62
ENST00000303450 HOXC9-001 protein_coding Homo_sapiens 2.8026e-45 187
ENST00000312492 HOXC5-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000343483 HOXA9-001 protein_coding Homo_sapiens 0 684
ENST00000357878 HMX3-001 protein_coding Homo_sapiens 0.00000001 66
ENST00000396345 HOXA9-003 protein_coding Homo_sapiens 0 569
ENST00000470747 HOXA10-HOXA9-001 protein_coding Homo_sapiens 0 571
ENST00000487384 HOXA9-004 processed_transcript Homo_sapiens 0 800
ENST00000489695 HOXA9-005 processed_transcript Homo_sapiens 0 377
ENST00000497089 HOXA9-002 processed_transcript Homo_sapiens 0 525
ENST00000504557 HOXC9-003 processed_transcript Homo_sapiens 1.4013e-45 187
ENST00000508190 HOXC9-002 protein_coding Homo_sapiens 2.8026e-45 187
ENST00000513209 RP11-834C11.12-001 protein_coding Homo_sapiens 0.00000008 62

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