C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154764 Itgb6-004 ENSMUSG00000026971 10090 - 2:60605139-60673726 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000154764
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000154764 0.040±0.00 0.618±0.31 3.485±1.89 1.609±0.00 8.167±3.80 0.031±0.00 7.223±0.43 0.753±0.37 0.665±0.00 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TX CIL_0005TX_0002 CGP 2:60417543-60722643
CIL_0005TW CIL_0005TW_0002 CGP 2:60598292-60963192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005178 IPI integrin binding
GO:0006954 IMP inflammatory response
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0043235 ISO receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148633 itgb1b.1-001 protein_coding Danio_rerio 0.00000002 66
ENSDART00000148454 itgb1b.1-002 protein_coding Danio_rerio 0.00000002 66
ENST00000283249 ITGB6-001 protein_coding Homo_sapiens 0 2501
ENST00000409583 ITGB6-002 nonsense_mediated_decay Homo_sapiens 0 2158
ENST00000409872 ITGB6-007 protein_coding Homo_sapiens 0 2645
ENST00000409967 ITGB6-004 protein_coding Homo_sapiens 0 1838
ENST00000428609 ITGB6-006 protein_coding Homo_sapiens 0 2362
ENST00000485635 ITGB6-005 processed_transcript Homo_sapiens 0 649
ENST00000620391 ITGB6-201 protein_coding Homo_sapiens 0 2158

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