C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154808 Ranbp17-004 ENSMUSG00000040594 10090 - 11:33302767-33330015 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0007NP CIL_0007NP_0002 UCNEbase 11:33192157-33430428

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389118 RANBP17-005 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000519256 RANBP17-002 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000519949 RANBP17-009 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000520586 RANBP17-016 processed_transcript Homo_sapiens 0 327
ENST00000520864 RANBP17-003 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000521759 RANBP17-010 processed_transcript Homo_sapiens 0 272
ENST00000522066 RANBP17-008 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000522533 RANBP17-007 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000523189 RANBP17-001 protein_coding Homo_sapiens 0 568
ENST00000523665 RANBP17-017 processed_transcript Homo_sapiens 0 272
ENST00000524364 RANBP17-018 processed_transcript Homo_sapiens 0 564
ENST00000616486 RANBP17-201 protein_coding Homo_sapiens 0 505

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