C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi associated, gamma adaptin ear containing, ARF binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154832 Gga3-011 ENSMUSG00000020740 10090 - 11:115584364-115589521 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLungOvaryPlacentaENSMUST00000154832
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Lung Ovary Placenta
ENSMUST00000154832 8.349±0.06 8.502±1.85 3.688±0.03 5.237±0.91 9.230±3.82 5.346±1.51 6.685±1.16 7.264±2.25 3.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IW CIL_0007IW_0002 CGP 11:115564434-115604051
CIL_0007I1 CIL_0007I1_0002 CGP 11:115584255-115608036

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325180 GGA1-024 protein_coding Homo_sapiens 0.0000000005 71
ENST00000343632 GGA1-001 protein_coding Homo_sapiens 0.0000000006 71
ENST00000381756 GGA1-002 protein_coding Homo_sapiens 0.0000000004 71
ENST00000406772 GGA1-003 protein_coding Homo_sapiens 0.0000000006 71
ENST00000460957 GGA1-022 retained_intron Homo_sapiens 0.0000000001 71
ENST00000537686 GGA3-002 protein_coding Homo_sapiens 0 252
ENST00000538886 GGA3-001 protein_coding Homo_sapiens 0 252
ENST00000578208 GGA3-018 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000578348 GGA3-004 protein_coding Homo_sapiens 4.00001e-40 171
ENST00000578773 GGA3-021 nonsense_mediated_decay Homo_sapiens 3e-40 169
ENST00000580646 GGA3-020 nonsense_mediated_decay Homo_sapiens 4.00001e-41 172
ENST00000582486 GGA3-006 protein_coding Homo_sapiens 3.00004e-41 174
ENST00000582717 GGA3-005 protein_coding Homo_sapiens 9.99995e-41 172
ENST00000583282 GGA3-019 protein_coding Homo_sapiens 8.99998e-41 171
ENST00000583667 GGA3-023 retained_intron Homo_sapiens 2e-31 139
ENST00000584550 GGA3-022 nonsense_mediated_decay Homo_sapiens 3.00004e-41 172
ENST00000613421 GGA3-007 retained_intron Homo_sapiens 0 252
ENST00000614198 GGA3-010 retained_intron Homo_sapiens 0 252
ENST00000621217 GGA3-008 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000621870 GGA3-003 nonsense_mediated_decay Homo_sapiens 0 252

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