C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gap junction protein, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155089 Gjc1-003 ENSMUSG00000034520 10090 - 11:102800731-102805788 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverLungOvaryPlacentaENSMUST00000155089
Transcript ID Adrenal Breast Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000155089 0.300±0.07 0.371±0.00 0.683±0.00 0.290±0.00 0.055±0.02 1.116±0.13 0.962±0.20 0.658±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0003CR CIL_0003CR_0002 CGP 11:102761439-102819700
CIL_0006U4 CIL_0006U4_0002 CGP 11:102799579-102838040

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330514 GJC1-003 protein_coding Homo_sapiens 0 813
ENST00000426548 GJC1-201 protein_coding Homo_sapiens 0 678
ENST00000586267 GJC1-005 protein_coding Homo_sapiens 0 346
ENST00000587113 GJC1-009 protein_coding Homo_sapiens 0.00000003 66
ENST00000587239 GJC1-007 protein_coding Homo_sapiens 0 357
ENST00000590758 GJC1-001 protein_coding Homo_sapiens 0 651
ENST00000591424 GJC1-004 protein_coding Homo_sapiens 0 490
ENST00000592524 GJC1-002 protein_coding Homo_sapiens 0 678

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