C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | PDZ and LIM domain 7 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000155098  |
Pdlim7-004 |
ENSMUSG00000021493 |
10090 | - |
13:55495795-55513438  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008A2 | CIL_0008A2_0002 | VISTA | 13:55104361-55707564 |
| CIL_0002YE | CIL_0002YE_0002 | CGP | 13:55473429-55513676 |
| CIL_0002YF | CIL_0002YF_0002 | CGP | 13:55495795-55528538 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001503 | IEA | ossification |
| GO:0001725 | IDA | stress fiber |
| GO:0001726 | IDA | ruffle |
| GO:0005515 | IPI | protein binding |
| GO:0005737 | IDA | cytoplasm |
| GO:0007275 | IEA | multicellular organismal development |
| GO:0008270 | IEA | zinc ion binding |
| GO:0030036 | IPI | actin cytoskeleton organization |
| GO:0030154 | IEA | cell differentiation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000355572
|
PDLIM7-004 | protein_coding | Homo_sapiens | 0 | 680 |
|
ENST00000355841
|
PDLIM7-001 | protein_coding | Homo_sapiens | 0 | 1688 |
|
ENST00000359895
|
PDLIM7-003 | protein_coding | Homo_sapiens | 0 | 1223 |
|
ENST00000393546
|
PDLIM7-012 | protein_coding | Homo_sapiens | 0 | 370 |
|
ENST00000393551
|
PDLIM7-007 | protein_coding | Homo_sapiens | 0 | 682 |
|
ENST00000463411
|
PDLIM7-008 | retained_intron | Homo_sapiens | 0 | 366 |
|
ENST00000486828
|
PDLIM7-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 1011 |
|
ENST00000493815
|
PDLIM7-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 1607 |
|
ENST00000504380
|
PDLIM7-017 | retained_intron | Homo_sapiens | 0 | 327 |
|
ENST00000505074
|
PDLIM7-015 | protein_coding | Homo_sapiens | 0 | 688 |
|
ENST00000505746
|
PDLIM7-016 | processed_transcript | Homo_sapiens | 0 | 270 |
|
ENST00000506161
|
PDLIM7-009 | protein_coding | Homo_sapiens | 0 | 614 |
|
ENST00000506537
|
PDLIM7-010 | protein_coding | Homo_sapiens | 0 | 337 |
