C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 11 X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155223 Pcdh11x-002 ENSMUSG00000034755 10090 + X:120401364-120906344 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000155223
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000155223 0.134±0.06 0.097±0.06 0.046±0.00 0.044±0.03 0.046±0.01 0.022±0.01 0.020±0.01 0.021±0.01 0.066±0.04 0.016±0.01 0.246±0.15 0.034±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B8 CIL_0007B8_0002 CGP X:119927196-120910619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298274 PCDH11X-005 processed_transcript Homo_sapiens 0 593
ENST00000361655 PCDH11X-007 protein_coding Homo_sapiens 0 656
ENST00000361724 PCDH11X-004 retained_intron Homo_sapiens 0 590
ENST00000373088 PCDH11X-003 protein_coding Homo_sapiens 0 590
ENST00000373094 PCDH11X-001 protein_coding Homo_sapiens 0 935
ENST00000373097 PCDH11X-002 protein_coding Homo_sapiens 0 656
ENST00000395337 PCDH11X-201 protein_coding Homo_sapiens 0 590
ENST00000406881 PCDH11X-008 protein_coding Homo_sapiens 0 935
ENST00000504220 PCDH11X-006 protein_coding Homo_sapiens 0 678

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