C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155243 Smarcd2-003 ENSMUSG00000078619 10090 - 11:106265312-106272965 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000155243
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000155243 12.756±0.00 97.883±0.00 52.169±14.16 45.384±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006QA CIL_0006QA_0002 CGP 11:106256154-106272972

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225742 SMARCD2-002 protein_coding Homo_sapiens 0 390
ENST00000323347 SMARCD2-003 protein_coding Homo_sapiens 0 390
ENST00000448276 SMARCD2-001 protein_coding Homo_sapiens 0 390
ENST00000578234 SMARCD2-009 retained_intron Homo_sapiens 0 390
ENST00000584400 SMARCD2-006 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000613943 SMARCD2-201 protein_coding Homo_sapiens 0 390

Loading